Population genetics C++ programs

I maintain a Github repository that contains a bunch of very basic C++ programs that use Markov chains and other types of simulations to infer basic statistical parameters. The applications mainly focus on Population Genetics problems, although this is not always the case. At the moment, the list of programs is:

bookshelf.cpp

Bookshelf Markov chain

brownian_motion_mcmc.cpp

Simulate standard Brownian motion (Wiener process)

coin_toss_mcmc.cpp

Run a coin toss MCMC simulation

cube_mcmc.cpp

Simulation of a Markov chain that moves around the eight vertices of a cube

ehrenfest_mcmc.cpp

Simulate gas particles in a divided box

general_discrete_distributions.cpp

Given K discrete events with different probabilities P[k], produce a random value k consistent with its probability

general_discrete_markov_chain.cpp

Simulate a general discrete Markov chain with a given transition probability matrix P

genetic_drift.cpp

Simulate genetic drift

hitchhiking.c

Simulate hitchhiking along a positively selected locus

stepping_stone_model.cpp

Simulate Stepping Stone Model with a Markov chain

Please check out the detailed documentation on the github repository.